Cell Maps Hierarchy Evaluation

The Cell Maps Hierarchy Evaluation is part of the Cell Mapping Toolkit

The Cell Maps Hierarchy Evaluation annotates a hierarchy created by Cell Maps Generate Hierarchy by performing enrichment against three NDEx networks HPA, CORUM, and GO-CC

• Free software: MIT license

• Source code: https://github.com/idekerlab/cellmaps_hierarchyeval

Contents:

• Installation
  • Stable release (option 1)
  • From sources (option 2)
• Usage
  • In a project
  • On the command line
  • Via Docker
• Inputs
• Outputs
  • Enriched Hierarchy and Parent Network
  • Node Attributes
  • Logs and Metadata
• Reference
  • cellmaps_hierarchyeval package
• Developer Topics
  • Contributing
  • Creating a new release
  • Expected configuration for .pypirc file
  • Integration testing
  • Versioning Scheme
• Credits
  • Developers
  • Contributors
• History
  • 0.2.2 (2025-05-15)
  • 0.2.1 (2025-03-20)
  • 0.2.0 (2024-12-02)
  • 0.1.0 (2024-09-09)

Indices and tables

• Index

• Module Index

• Search Page